Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR5626543

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing with elevated adapter contamination at 25.43% (scored 0/100), which introduces systematic sequencing errors that compromise variant detection; unsuitable for reliable genotyping despite low intrinsic duplication.

Data type / assay
WGS
Organism
Holacanthella duospinosa
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 14393812000 reported
total reads 71969060 reported
n content pct 0.002 measured
pct q20 bases 97.3 measured
pct q30 bases 92.8 measured
gc content pct 34.9 measured
mean read length 100 measured
mean base quality 36.3 measured
adapter content pct 25.43 measured
duplication rate pct 1.25 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%
duplication rate pct 1.25 measured ×0.5 100%
adapter content pct 25.43 measured ×0.4 0%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 72