SRR5663741

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

31/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Zea mays

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3887016028 reported

total reads 12870914 reported

mean coverage 1.7 extrapolated

n content pct 0.008 measured

pct q20 bases 85 measured

pct q30 bases 73.7 measured

gc content pct 49.1 measured

mean read length 151 measured

mean base quality 31.1 measured

adapter content pct 2.22 measured

duplication rate pct 13.87 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 31/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 1.7 extrapolated ×1.2 0%

pct q30 bases 73.7 measured ×1 19%

duplication rate pct 13.87 measured ×0.5 82%

adapter content pct 2.22 measured ×0.4 91%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0