SRR5723273

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Silkworm transcriptome on HiSeq 2000 (earlier platform) generated 22.8 million short reads with good quality (94.3% ≥Q20, 88.6% ≥Q30). The accumulated Bombyx replicates across sequencers enable expression resource comparability.

Data type / assay

bulk-RNA-seq

Organism

Bombyx mori

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5697192500 reported

total reads 22788770 reported

n content pct 0.015 measured

pct q20 bases 94.3 measured

pct q30 bases 88.6 measured

gc content pct 48.4 measured

mean read length 125 measured

mean base quality 34.6 measured

adapter content pct 10.51 measured

duplication rate pct 17.97 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.6 measured ×1 93%

mean base quality 34.6 measured ×0.6 100%

adapter content pct 10.51 measured ×0.4 53%

duplication rate pct 17.97 measured ×0.4 100%

QC cost 43 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0