SRR579551

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

73/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Chicken (Gallus gallus) transcriptome on HiSeq 2000 generated 77.3 million short reads with reported exceptional quality (100% ≥Q20 and ≥Q30). The avian model and livestock importance enable comprehensive expression profiling across tissues and conditions.

Data type / assay

bulk-RNA-seq

Organism

Gallus gallus

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 11136419856 reported

total reads 77336249 reported

n content pct 0 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 53.8 measured

mean read length 72 measured

mean base quality 30 measured

adapter content pct 4.11 measured

duplication rate pct 51.86 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 73/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 4.11 measured ×0.4 88%

duplication rate pct 51.86 measured ×0.4 51%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0