Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR5832819

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

57/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

miRNA-Seq (mouse), score F=57/100. Multiple suboptimal metrics: Q30 at 81.1% (scored 56), duplication at 72.49% (scored 6), and mean quality 32. Better than SRR5832818 and SRR5832837 but still insufficient for high-confidence work; extensive filtering and validation would be required.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 749515100 reported
total reads 14990302 reported
n content pct 0.006 measured
pct q20 bases 86.9 measured
pct q30 bases 81.1 measured
gc content pct 44.3 measured
mean read length 50 measured
mean base quality 32 measured
adapter content pct 0 measured
duplication rate pct 72.49 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 57/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 81.1 measured ×1 56%
mean base quality 32 measured ×0.6 67%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 72.49 measured ×0.4 6%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89