Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR584192

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2000 short-read RNA-seq from Apis mellifera (honeybee) with 8.6M reads and 98.1% Q20 bases indicating excellent base accuracy with zero N content. The 32.7% GC content is characteristic of hymenopteran genomes and the dataset supports gene expression profiling of honeybee tissues or developmental stages. Quality metrics favor reliable mapping to the reference genome for quantifying transcript abundance in studies of social insect biology.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1544644136 reported
total reads 8602996 reported
n content pct 0 measured
pct q20 bases 98.1 measured
pct q30 bases 90.6 measured
gc content pct 32.7 measured
mean read length 95.5 measured
mean base quality 35.7 measured
adapter content pct 0.59 measured
duplication rate pct 55.69 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.6 measured ×1 100%
mean base quality 35.7 measured ×0.6 100%
adapter content pct 0.59 measured ×0.4 100%
duplication rate pct 55.69 measured ×0.4 43%
QC cost 58 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0