SRR5908338

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WES

Organism

Homo sapiens

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 27496005500 reported

total reads 137919438 reported

n content pct 0.153 measured

pct q20 bases 87.6 measured

pct q30 bases 72.9 measured

gc content pct 42.3 measured

mean read length 100 measured

mean base quality 33.4 measured

adapter content pct 0.97 measured

duplication rate pct 20.74 measured

mean target coverage 443.5 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 443.5 extrapolated ×1.2 100%

pct q30 bases 72.9 measured ×1 14%

duplication rate pct 20.74 measured ×0.5 74%

adapter content pct 0.97 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0