SRR5908341

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WES

Organism

Homo sapiens

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 27883538100 reported

total reads 139691640 reported

n content pct 0.236 measured

pct q20 bases 82.9 measured

pct q30 bases 66.1 measured

gc content pct 41.2 measured

mean read length 100 measured

mean base quality 31.6 measured

adapter content pct 1.29 measured

duplication rate pct 9.53 measured

mean target coverage 449.7 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 449.7 extrapolated ×1.2 100%

pct q30 bases 66.1 measured ×1 0%

duplication rate pct 9.53 measured ×0.5 100%

adapter content pct 1.29 measured ×0.4 98%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0