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SRR5930495
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
91/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
human gut metagenome
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
11.02
measured
checksum ok
yes
reported
total bases
9690798211
reported
total reads
48725996
reported
n content pct
0.105
measured
pct q20 bases
91.9
measured
pct q30 bases
86.6
measured
pct reads q30
84.9
measured
sampled bases
79246583
measured
sampled reads
797184
measured
gc content pct
46.6
measured
polyg tail pct
0
measured
read length sd
3.1
measured
quality dropoff
0.4
measured
read length max
100
measured
read length min
35
measured
read length n50
100
measured
max base quality
40
measured
mean read length
99.4
measured
max n pct per pos
0.368
measured
mean base quality
35.5
measured
pct reads lt 100bp
32.81
measured
read length median
100
measured
adapter content pct
0
measured
median read quality
37.9
measured
duplication rate pct
0.91
measured
overrepresented top pct
0.21
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 91/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
86.6
measured
×1
83%
duplication rate pct
0.91
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
16 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0