SRR594463

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Rhesus macaque (Macaca mulatta) transcriptome on HiSeq 2000 generated 115.4 million short reads with moderate quality (90.8% ≥Q20, 82.1% ≥Q30). The primate model and exceptional read depth enable comprehensive expression profiling in this comparative genomics model.

Data type / assay

bulk-RNA-seq

Organism

Macaca mulatta

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 18470691040 reported

total reads 115441819 reported

n content pct 0.064 measured

pct q20 bases 90.8 measured

pct q30 bases 82.1 measured

gc content pct 48.9 measured

mean read length 80 measured

mean base quality 32.8 measured

adapter content pct 0.02 measured

duplication rate pct 13.78 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.1 measured ×1 61%

mean base quality 32.8 measured ×0.6 80%

adapter content pct 0.02 measured ×0.4 100%

duplication rate pct 13.78 measured ×0.4 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0