Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR5990018

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome short-read sequencing of Populus alba var. pyramidalis (Lombardy poplar) using HiSeq 2500 with 65.5M reads and 16.4B bases enabling genome assembly and variant detection in this deciduous tree. The 36.9% GC and 90.8% Q20 support nucleotide-level variant calling and heterozygosity mapping in woody perennials. Reusable for comparative genomics of poplar clones, marker development, or studying structural variation in clonal propagation.

Data type / assay
WGS
Organism
Populus alba var. pyramidalis
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16381340000 reported
total reads 65525360 reported
n content pct 0 measured
pct q20 bases 90.8 measured
pct q30 bases 82.9 measured
gc content pct 36.9 measured
mean read length 150 measured
mean base quality 34 measured
adapter content pct 0.02 measured
duplication rate pct 2.28 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.9 measured ×1 65%
duplication rate pct 2.28 measured ×0.5 100%
adapter content pct 0.02 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0