SRR6024562

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Bos taurus

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 36756884853 reported

total reads 123932939 reported

mean coverage 13.6 extrapolated

n content pct 0 measured

pct q20 bases 97.3 measured

pct q30 bases 95.3 measured

gc content pct 46.1 measured

mean read length 148.7 measured

mean base quality 38 measured

adapter content pct 0.16 measured

duplication rate pct 14.46 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 13.6 extrapolated ×1.2 26%

pct q30 bases 95.3 measured ×1 100%

duplication rate pct 14.46 measured ×0.5 80%

adapter content pct 0.16 measured ×0.4 100%

QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0