Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
← Dataset search

SRR6059170

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

miRNA-Seq from Apis mellifera (honeybee) using HiSeq 2500 with 14M reads and excellent 98% Q20, 96.2% Q30 enabling comprehensive small-RNA profiling of a well-studied hymenopteran. The 701M bases and 49.5% GC support studies of developmentally-regulated and caste-specific microRNAs in the honey bee. Data are suitable for understanding miRNA control of worker–queen differentiation and colony-level social regulation in eusocial insects.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 701086400 reported
total reads 14021728 reported
n content pct 0.002 measured
pct q20 bases 98 measured
pct q30 bases 96.2 measured
gc content pct 49.5 measured
mean read length 50 measured
mean base quality 36.7 measured
adapter content pct 0 measured
duplication rate pct 64.68 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%
mean base quality 36.7 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 64.68 measured ×0.4 23%
QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0