Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR6233939

SRA

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

WGS (Salmonella enterica subsp. enterica serovar Adjame). A grade, suitable for reuse. Good base quality (Q30=93.6%, mean Q=37.2) with well-controlled duplication (20.68%) and minimal N-content supports robust variant calling for this small bacterial genome.

Data type / assay
WGS
Organism
Salmonella enterica subsp. enterica serovar Adjame
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 431367572 reported
total reads 2153735 reported
n content pct 0.001 measured
pct q20 bases 96.5 measured
pct q30 bases 93.6 measured
gc content pct 51.2 measured
mean read length 100.1 measured
mean base quality 37.2 measured
adapter content pct 0 measured
duplication rate pct 20.68 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.6 measured ×1 100%
duplication rate pct 20.68 measured ×0.5 60%
adapter content pct 0 measured ×0.4 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 100