Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR6237100

SRA

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

WGS (Salmonella enterica subsp. enterica serovar Adjame). B grade, suitable for reuse. High base quality (Q30=96.3%, mean Q=38.2) supports reliable variant calls; low read count (2.49M) is appropriate for small-genome assembly and variant discovery despite slightly elevated duplication (24.81%).

Data type / assay
WGS
Organism
Salmonella enterica subsp. enterica serovar Adjame
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 491229091 reported
total reads 2485777 reported
n content pct 0.004 measured
pct q20 bases 98.1 measured
pct q30 bases 96.3 measured
gc content pct 52.3 measured
mean read length 98.8 measured
mean base quality 38.2 measured
adapter content pct 0 measured
duplication rate pct 24.81 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.3 measured ×1 100%
duplication rate pct 24.81 measured ×0.5 48%
adapter content pct 0 measured ×0.4 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 100