SRR6322635

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

methylation

Organism

Solanum lycopersicum

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 8.08 measured

checksum ok yes reported

total bases 21095891700 reported

total reads 70319639 reported

n content pct 0.002 measured

pct q20 bases 94.9 measured

pct q30 bases 87.9 measured

pct reads q30 93.5 measured

sampled bases 94154700 measured

sampled reads 627698 measured

gc content pct 21.4 measured

polyg tail pct 0 measured

read length sd 0 measured

quality dropoff -5.8 measured

read length max 150 measured

read length min 150 measured

read length n50 150 measured

max base quality 41 measured

mean read length 150 measured

max n pct per pos 0.468 measured

mean base quality 37.2 measured

pct reads lt 100bp 0 measured

read length median 150 measured

adapter content pct 9.05 measured

median read quality 38.6 measured

duplication rate pct 17.62 measured

overrepresented top pct 0.06 measured

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published methylation thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.9 measured ×1 90%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0