SRR6348739

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

56/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Ovis aries

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.74 measured

checksum ok yes reported

total bases 797536201 reported

total reads 87498 reported

n content pct 0 measured

sampled bases 59948622 measured

sampled reads 6491 measured

gc content pct 41.9 measured

polyg tail pct 0 measured

read length sd 6312.2 measured

quality dropoff 1.8 measured

read length max 37806 measured

read length min 50 measured

read length n50 13570 measured

max base quality 15 measured

mean read length 9235.7 measured

max n pct per pos 0 measured

mean base quality 9.9 measured

pct reads lt 100bp 0.12 measured

read length median 8524 measured

adapter content pct 0 measured

median read quality 9.9 measured

duplication rate pct 0 measured

overrepresented top pct 0.02 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 56/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 13570 measured ×1 62%

mean base quality 9.9 measured ×0.8 0%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0