SRR6348762

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

56/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Ovis aries

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

gc sd 6.69 measured

checksum ok yes reported

total bases 1167484030 reported

total reads 124406 reported

n content pct 0 measured

sampled bases 59546633 measured

sampled reads 6232 measured

gc content pct 41.9 measured

polyg tail pct 0 measured

read length sd 6325.2 measured

quality dropoff 1 measured

read length max 39960 measured

read length min 52 measured

read length n50 13411 measured

max base quality 15 measured

mean read length 9555 measured

max n pct per pos 0 measured

mean base quality 9.6 measured

pct reads lt 100bp 0.14 measured

read length median 8686 measured

adapter content pct 0.02 measured

median read quality 9.6 measured

duplication rate pct 0 measured

overrepresented top pct 0.02 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 56/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

read length n50 13411 measured ×1 61%

mean base quality 9.6 measured ×0.8 0%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0.02 measured ×0.4 100%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0