Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR6423815

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Bos indicus (zebu cattle) on HiSeq 2500 produced 86 million 100 bp reads at 94.5% Q20 and 86.7% Q30 across 17.2 Gb. The 49.5% GC and reasonable quality metrics enable SNP discovery and structural variant detection for livestock genomics; useful for breed characterization or selection studies in cattle populations.

Data type / assay
WGS
Organism
Bos indicus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 17187580800 reported
total reads 85937904 reported
n content pct 0.053 measured
pct q20 bases 94.5 measured
pct q30 bases 86.7 measured
gc content pct 49.5 measured
mean read length 100 measured
mean base quality 34.3 measured
adapter content pct 0 measured
duplication rate pct 11.74 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.7 measured ×1 84%
duplication rate pct 11.74 measured ×0.5 88%
adapter content pct 0 measured ×0.4 100%
QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 86