Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR6650038

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Zebu cattle WGS on HiSeq X Ten delivered 97.5 million 91.7 bp reads at 97.5% Q20 and 92.2% Q30 across 18.9 Gb with excellent depth uniformity. The 42.9% GC and consistent quality metrics enable high-confidence SNP and indel calling; suitable for GWAS or fine-mapping of economically important traits in livestock genetics.

Data type / assay
WGS
Organism
Bos indicus
Instrument
HiSeq X Ten
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 18858655018 reported
total reads 97497925 reported
n content pct 0.007 measured
pct q20 bases 97.5 measured
pct q30 bases 92.2 measured
gc content pct 42.9 measured
mean read length 91.7 measured
mean base quality 35.9 measured
adapter content pct 0.17 measured
duplication rate pct 2.9 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.2 measured ×1 100%
duplication rate pct 2.9 measured ×0.5 100%
adapter content pct 0.17 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 86