Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR7006118

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Deep bulk RNA-seq from Prunus mume (Japanese apricot / Chinese plum) using HiSeq 3000 with 58.5M reads and solid 95% Q20, 86.5% Q30 enabling comprehensive transcriptome profiling of a commercially important rosaceous fruit tree. The 17.6B bases and 46% GC support gene expression studies across tissues, fruit development stages, or stress conditions in stone fruits. Reusable for comparative Prunus genomics, fruit-quality trait characterization, and breeding-directed transcript discovery in cultivars.

Data type / assay
bulk-RNA-seq
Organism
Prunus mume
Instrument
Illumina HiSeq 3000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 17560162800 reported
total reads 58533876 reported
n content pct 0.003 measured
pct q20 bases 95 measured
pct q30 bases 86.5 measured
gc content pct 46 measured
mean read length 150 measured
mean base quality 36.6 measured
adapter content pct 5.83 measured
duplication rate pct 21.01 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.5 measured ×1 83%
mean base quality 36.6 measured ×0.6 100%
adapter content pct 5.83 measured ×0.4 79%
duplication rate pct 21.01 measured ×0.4 100%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0