SRR7460790

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Apis mellifera bulk RNA-Seq dataset from the HiSeq X Ten platform contains 27.9 million short reads (8.37 billion bases) with outstanding quality (98.2% Q20, 95.2% Q30 bytes). The exceptional depth and base quality enable comprehensive honey bee transcriptome profiling. Search terms: honey bee transcriptomics, HiSeq X Ten, insect gene expression, social insect behavior, genomic resource.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8367410100 reported

total reads 27891367 reported

n content pct 0.002 measured

pct q20 bases 98.2 measured

pct q30 bases 95.2 measured

gc content pct 38 measured

mean read length 150 measured

mean base quality 38 measured

adapter content pct 1.12 measured

duplication rate pct 55.57 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.2 measured ×1 100%

mean base quality 38 measured ×0.6 100%

adapter content pct 1.12 measured ×0.4 100%

duplication rate pct 55.57 measured ×0.4 43%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0