SRR7472358

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Large-scale Apis mellifera transcriptome (83.9 million reads, 8.39 Gb) from HiSeq 2000 with high throughput (90.5% Q20), suitable for comprehensive gene expression profiling in honeybees. The dataset supports developmental, behavioral, and immune-response transcriptomics in a key social insect.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8394653100 reported

total reads 83946531 reported

n content pct 0.563 measured

pct q20 bases 90.5 measured

pct q30 bases 84.9 measured

gc content pct 45.1 measured

mean read length 100 measured

mean base quality 33.3 measured

adapter content pct 0.49 measured

duplication rate pct 23.97 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.9 measured ×1 75%

mean base quality 33.3 measured ×0.6 88%

adapter content pct 0.49 measured ×0.4 100%

duplication rate pct 23.97 measured ×0.4 100%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0