SRR7777132

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Exceptionally deep Euschistus heros (brown stink bug) HiSeq 2000 transcriptome with 126.5 million reads (25.5 Gb) and perfect Q20 (100%), delivering saturating coverage for rare transcript discovery. Large-scale RNA-seq enables comprehensive pesticide-resistance and developmental-gene mapping in hemipterans.

Data type / assay

bulk-RNA-seq

Organism

Euschistus heros

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 25544079276 reported

total reads 126455838 reported

n content pct 0.002 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 40.1 measured

mean read length 101 measured

mean base quality 30 measured

adapter content pct 0.82 measured

duplication rate pct 72.67 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0.82 measured ×0.4 100%

duplication rate pct 72.67 measured ×0.4 5%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0