SRR7938851

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Aedes aegypti HiSeq 4000 transcriptome with 67.3 million reads (6.73 Gb) and excellent quality (99% Q20, 96.9% Q30). Multiplexes well with SRR7938859/SRR7938863 for comprehensive Aedes gene-expression experiments across conditions or tissues.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6728988500 reported

total reads 67289885 reported

n content pct 0.008 measured

pct q20 bases 99 measured

pct q30 bases 96.9 measured

gc content pct 48 measured

mean read length 50 measured

mean base quality 39.3 measured

adapter content pct 0.01 measured

duplication rate pct 39.11 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%

mean base quality 39.3 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 39.11 measured ×0.4 80%

QC cost 1.1 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0