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SRR8114029
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
87/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
human oral metagenome
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
13.45
measured
checksum ok
yes
reported
total bases
366049476
reported
total reads
1806533
reported
n content pct
0
measured
pct q20 bases
93.6
measured
pct q30 bases
85.1
measured
pct reads q30
80.6
measured
sampled bases
11258557
measured
sampled reads
143601
measured
gc content pct
41.5
measured
polyg tail pct
0
measured
read length sd
30.7
measured
quality dropoff
0.8
measured
read length max
150
measured
read length min
40
measured
read length n50
90
measured
max base quality
41
measured
mean read length
78.4
measured
max n pct per pos
0
measured
mean base quality
36.2
measured
pct reads lt 100bp
73.4
measured
read length median
71
measured
adapter content pct
0.07
measured
median read quality
37.1
measured
duplication rate pct
2.34
measured
overrepresented top pct
0.04
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 87/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
85.1
measured
×1
76%
duplication rate pct
2.34
measured
×0.5
100%
adapter content pct
0.07
measured
×0.4
100%
QC cost
4 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0