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SRR8236746
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
97/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
9.65
measured
checksum ok
yes
reported
total bases
164722952782
reported
total reads
545440241
reported
mean coverage
53.1
extrapolated
n content pct
0
measured
pct q20 bases
98.3
measured
pct q30 bases
95.2
measured
pct reads q30
98.1
measured
sampled bases
113834219
measured
sampled reads
753869
measured
gc content pct
40.9
measured
polyg tail pct
0.11
measured
read length sd
0
measured
quality dropoff
-0.9
measured
read length max
151
measured
read length min
151
measured
read length n50
151
measured
max base quality
37
measured
mean read length
151
measured
max n pct per pos
0
measured
mean base quality
36.2
measured
pct reads lt 100bp
0
measured
read length median
151
measured
adapter content pct
2
measured
median read quality
36.7
measured
duplication rate pct
12.96
measured
overrepresented top pct
0
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
53.1
extrapolated
×1.2
100%
pct q30 bases
95.2
measured
×1
100%
duplication rate pct
12.96
measured
×0.5
85%
adapter content pct
2
measured
×0.4
93%
QC cost
29 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0