SRR8324594

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bos taurus (cattle) WGS on HiSeq 4000 with 235 million reads (71 Gb) and 26.3× mean coverage, good quality (96.1% Q20, 90.2% Q30). Livestock whole-genome data for breed characterization, structural variant discovery, and agricultural genomics.

Data type / assay

WGS

Organism

Bos taurus

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 70984802832 reported

total reads 235049016 reported

mean coverage 26.3 extrapolated

n content pct 0.003 measured

pct q20 bases 96.1 measured

pct q30 bases 90.2 measured

gc content pct 43.8 measured

mean read length 151 measured

mean base quality 37.7 measured

adapter content pct 0.12 measured

duplication rate pct 10.12 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 26.3 extrapolated ×1.2 83%

pct q30 bases 90.2 measured ×1 100%

duplication rate pct 10.12 measured ×0.5 93%

adapter content pct 0.12 measured ×0.4 100%

QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0