SRR834589

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Large-scale human WGS on Illumina MiSeq with 1.27 billion reads (253.4 Gb) and estimated 81.7× genomic coverage. Comprehensive clinical-grade genome sequencing; lower Q20 (86%) reflects MiSeq run characteristics but sufficient for variant calling and diploid genotyping.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 253366139200 reported

total reads 1266830696 reported

mean coverage 81.7 extrapolated

n content pct 0.009 measured

pct q20 bases 86 measured

pct q30 bases 76.8 measured

gc content pct 50.9 measured

mean read length 100 measured

mean base quality 31.3 measured

adapter content pct 0.14 measured

duplication rate pct 12.29 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 81.7 extrapolated ×1.2 100%

pct q30 bases 76.8 measured ×1 34%

duplication rate pct 12.29 measured ×0.5 87%

adapter content pct 0.14 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0