SRR8352174

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Aphis gossypii (cotton aphid) RNA-seq on BGISEQ-500 with 60.8 million reads (6.08 Gb) and good quality (96.7% Q20, 87.1% Q30). Cost-effective transcript profiling for an agricultural pest; enables aphid genetics and plant-pest interaction studies on an alternative platform.

Data type / assay

bulk-RNA-seq

Organism

Aphis gossypii

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6082791000 reported

total reads 60827910 reported

n content pct 0.275 measured

pct q20 bases 96.7 measured

pct q30 bases 87.1 measured

gc content pct 43.5 measured

mean read length 100 measured

mean base quality 34.3 measured

adapter content pct 0 measured

duplication rate pct 26.44 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.1 measured ×1 86%

mean base quality 34.3 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 26.44 measured ×0.4 100%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0