SRR837506

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

19/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1220548450 reported

total reads 24410969 reported

n content pct 0 measured

pct q20 bases 30.3 measured

pct q30 bases 24 measured

gc content pct 54.1 measured

mean read length 50 measured

mean base quality 12 measured

adapter content pct 0 measured

duplication rate pct 69.78 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 19/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 24 measured ×1 0%

mean base quality 12 measured ×0.6 0%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 69.78 measured ×0.4 12%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0