SRR8479440

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Cydia pomonella

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5967277092 reported

total reads 23679671 reported

n content pct 0.013 measured

pct q20 bases 95.2 measured

pct q30 bases 90.8 measured

gc content pct 47.8 measured

mean read length 126 measured

mean base quality 35.5 measured

adapter content pct 11.23 measured

duplication rate pct 40 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.8 measured ×1 100%

mean base quality 35.5 measured ×0.6 100%

adapter content pct 11.23 measured ×0.4 49%

duplication rate pct 40 measured ×0.4 78%

QC cost 41 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0