SRR8517943

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WES

Organism

Homo sapiens

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 14619859800 reported

total reads 48732866 reported

n content pct 0 measured

pct q20 bases 98.1 measured

pct q30 bases 94.7 measured

gc content pct 57.8 measured

mean read length 150 measured

mean base quality 39.6 measured

adapter content pct 16.83 measured

duplication rate pct 5.42 measured

mean target coverage 235.8 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 235.8 extrapolated ×1.2 100%

pct q30 bases 94.7 measured ×1 100%

duplication rate pct 5.42 measured ×0.5 100%

adapter content pct 16.83 measured ×0.4 0%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0