SRR8517946

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WES

Organism

Homo sapiens

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 17829376800 reported

total reads 59431256 reported

n content pct 0 measured

pct q20 bases 98.5 measured

pct q30 bases 95.8 measured

gc content pct 52.9 measured

mean read length 150 measured

mean base quality 40 measured

adapter content pct 15.71 measured

duplication rate pct 6.66 measured

mean target coverage 287.6 extrapolated

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 287.6 extrapolated ×1.2 100%

pct q30 bases 95.8 measured ×1 100%

duplication rate pct 6.66 measured ×0.5 100%

adapter content pct 15.71 measured ×0.4 0%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0