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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Vibrio atlanticus LGP32
Instrument
Illumina HiSeq 3000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
9951326700
reported
total reads
33171089
reported
n content pct
0.007
measured
pct q20 bases
98.2
measured
pct q30 bases
94.8
measured
gc content pct
49.1
measured
mean read length
150
measured
mean base quality
39
measured
adapter content pct
26.79
measured
duplication rate pct
81.44
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
94.8
measured
×1
100%
mean base quality
39
measured
×0.6
100%
adapter content pct
26.79
measured
×0.4
0%
duplication rate pct
81.44
measured
×0.4
0%
QC cost
31 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0