SRR8585622

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Chilo suppressalis bulk RNA-seq grading A (98/100) with exceptional base quality (Q30=96.2%, mean=39.5) and 141bp reads, marginally penalized by 35% duplication (88/100). Duplication at this level is typical for quality RNA-seq; high base quality and read length strongly support gene expression quantification.

Data type / assay

bulk-RNA-seq

Organism

Chilo suppressalis

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6110032716 reported

total reads 21705204 reported

n content pct 0.169 measured

pct q20 bases 98.6 measured

pct q30 bases 96.2 measured

gc content pct 44.9 measured

mean read length 141.1 measured

mean base quality 39.5 measured

adapter content pct 0.01 measured

duplication rate pct 35.48 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%

mean base quality 39.5 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 35.48 measured ×0.4 88%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0