SRR8587776

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Excellent short-read RNA-seq with minimal adapter contamination (2.83%) and low background noise across metrics; Q30 bases at 96.5% and mean quality 36.1 support accurate expression quantification. Fully reusable for differential expression and transcript discovery with high confidence.

Data type / assay

bulk-RNA-seq

Organism

Drosophila suzukii

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 11272326750 reported

total reads 45089307 reported

n content pct 0.004 measured

pct q20 bases 98.3 measured

pct q30 bases 96.5 measured

gc content pct 48.1 measured

mean read length 125 measured

mean base quality 36.1 measured

adapter content pct 2.83 measured

duplication rate pct 34.32 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.5 measured ×1 100%

mean base quality 36.1 measured ×0.6 100%

adapter content pct 2.83 measured ×0.4 95%

duplication rate pct 34.32 measured ×0.4 90%

QC cost 40 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0