Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR8652105

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

3 further papers cite this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human whole-genome sequencing via Illumina HiSeq 2000 with good depth (568M reads, 37x coverage) but moderate quality metrics (89.8% Q20, 81.8% Q30), suggesting sequencing chemistry issues or lower-than-ideal library complexity. Depth partially compensates for quality concerns in variant calling, though genotyping confidence may vary.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 114803322560 reported
total reads 568333280 reported
mean coverage 37 extrapolated
n content pct 0.026 measured
pct q20 bases 89.8 measured
pct q30 bases 81.8 measured
gc content pct 52.7 measured
mean read length 101 measured
mean base quality 32.7 measured
adapter content pct 0.81 measured
duplication rate pct 8.04 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 37 extrapolated ×1.2 100%
pct q30 bases 81.8 measured ×1 59%
duplication rate pct 8.04 measured ×0.5 100%
adapter content pct 0.81 measured ×0.4 100%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0