Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR8668975

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Solenopsis invicta RNA-seq grading C (78/100) due to severe 21% adapter contamination (0/100 score), the single dominant quality failure. Adapter-heavy reads will introduce systematic alignment bias and spurious abundance calls; this dataset requires aggressive trimming or resequencing before reuse.

Data type / assay
bulk-RNA-seq
Organism
Solenopsis invicta
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5913447250 reported
total reads 23653789 reported
n content pct 0.007 measured
pct q20 bases 93.4 measured
pct q30 bases 87.4 measured
gc content pct 43.1 measured
mean read length 125 measured
mean base quality 34.8 measured
adapter content pct 21.26 measured
duplication rate pct 28.04 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.4 measured ×1 87%
mean base quality 34.8 measured ×0.6 100%
adapter content pct 21.26 measured ×0.4 0%
duplication rate pct 28.04 measured ×0.4 100%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0