Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR871527

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq (cnidarian, HiSeq 2000), near-perfect score (A=99/100). Q30 at 92.1%, mean quality 35.9, duplication at 31.59% (scored 96/100), minimal adapter (0.3%), and large depth (52.5M reads) with exceptional library control. Highly suitable for reuse.

Data type / assay
bulk-RNA-seq
Organism
Nanomia bijuga
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10506688600 reported
total reads 52533443 reported
n content pct 0.026 measured
pct q20 bases 94.6 measured
pct q30 bases 92.1 measured
gc content pct 36.5 measured
mean read length 100 measured
mean base quality 35.9 measured
adapter content pct 0.3 measured
duplication rate pct 31.59 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.1 measured ×1 100%
mean base quality 35.9 measured ×0.6 100%
adapter content pct 0.3 measured ×0.4 100%
duplication rate pct 31.59 measured ×0.4 97%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 flagged mean score 68