Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR8800825

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bactrocera oleae bulk RNA-seq grading B (87/100) with excellent base metrics (Q30=95.9%, mean=37) severely constrained by extreme 64% duplication (24/100 score), indicating substantial PCR bias. High redundancy inflates apparent variance and degrades effective sample complexity; reuse demands deduplication or prioritization of biological replicates.

Data type / assay
bulk-RNA-seq
Organism
Bactrocera oleae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10882841000 reported
total reads 54414205 reported
n content pct 0.009 measured
pct q20 bases 98.7 measured
pct q30 bases 95.9 measured
gc content pct 39.2 measured
mean read length 100 measured
mean base quality 37 measured
adapter content pct 2.07 measured
duplication rate pct 63.99 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.9 measured ×1 100%
mean base quality 37 measured ×0.6 100%
adapter content pct 2.07 measured ×0.4 100%
duplication rate pct 63.99 measured ×0.4 25%
QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0