Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR8836963

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

66/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Shigella flexneri WGS on MiSeq matching SAMN10086692 (510k 233.8 bp reads, 86.6% Q20, 80.4% Q30) indicates possible replicate. The 50.8% GC and acceptable quality enable strain-level characterization and outbreak investigations in enteric disease surveillance.

Data type / assay
WGS
Organism
Shigella flexneri
Instrument
Illumina MiSeq
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 240872544 reported
total reads 510759 reported
n content pct 0.012 measured
pct q20 bases 86.6 measured
pct q30 bases 80.4 measured
gc content pct 50.8 measured
mean read length 233.8 measured
mean base quality 33.1 measured
adapter content pct 0 measured
duplication rate pct 18.67 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 66/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.4 measured ×1 52%
duplication rate pct 18.67 measured ×0.5 67%
adapter content pct 0 measured ×0.4 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 92