Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR8837012

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Shigella sonnei WGS on MiSeq with identical statistics to SAMN10086663 (694k 235.4 bp reads, 88.3% Q20, 82.6% Q30) represents a potential replicate or linked analysis. The 51.3% GC and reasonable quality support clinical isolate sequencing for resistance profiling.

Data type / assay
WGS
Organism
Shigella sonnei
Instrument
Illumina MiSeq
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 329810900 reported
total reads 694441 reported
n content pct 0.008 measured
pct q20 bases 88.3 measured
pct q30 bases 82.6 measured
gc content pct 51.3 measured
mean read length 235.4 measured
mean base quality 33.6 measured
adapter content pct 0 measured
duplication rate pct 14.3 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.6 measured ×1 63%
duplication rate pct 14.3 measured ×0.5 80%
adapter content pct 0 measured ×0.4 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 92