SRR8874659

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

WGS from Salmonella enterica with grade A (99/100). Exceptional combination of very low duplication (9.7%), long reads (225.6 bp), and zero adapters makes this ideal for assembly-level work; Q30=91.2% guarantees base-level accuracy. Suitable for de novo assembly and structural variant discovery.

Data type / assay

WGS

Organism

Salmonella enterica

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 879824108 reported

total reads 1934426 reported

n content pct 0.017 measured

pct q20 bases 94.4 measured

pct q30 bases 91.2 measured

gc content pct 53.2 measured

mean read length 225.6 measured

mean base quality 35.6 measured

adapter content pct 0 measured

duplication rate pct 9.72 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.2 measured ×1 100%

duplication rate pct 9.72 measured ×0.5 95%

adapter content pct 0 measured ×0.4 100%

QC cost 45 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0