Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

SRR8895604

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq from Camponotus floridanus with grade A (99/100). Very low duplication (32.9%), zero adapters, and large read count (20M) are exceptional; reads are very short (41.5 bp), which may compromise mapping to complex genomes but is offset by high quality (Q30=94%). Excellent for well-characterized organisms.

Data type / assay
bulk-RNA-seq
Organism
Camponotus floridanus
Instrument
NextSeq 550
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1691129851 reported
total reads 20379249 reported
n content pct 0.21 measured
pct q20 bases 96 measured
pct q30 bases 94 measured
gc content pct 39.2 measured
mean read length 41.5 measured
mean base quality 34.1 measured
adapter content pct 0 measured
duplication rate pct 32.94 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94 measured ×1 100%
mean base quality 34.1 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 32.94 measured ×0.4 94%
QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0