SRR8895607

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq (NextSeq 550, Camponotus floridanus). Grade A with exceptional Q30 (97.9%) and base quality, limited mainly by moderate duplication (34.84%, scored 89/100). Very short reads (41.5 bp) may compromise isoform resolution—excellent for gene-level expression only.

Data type / assay

bulk-RNA-seq

Organism

Camponotus floridanus

Instrument

NextSeq 550

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2007170794 reported

total reads 24205769 reported

n content pct 0.497 measured

pct q20 bases 98.4 measured

pct q30 bases 97.9 measured

gc content pct 40.6 measured

mean read length 41.5 measured

mean base quality 35 measured

adapter content pct 0 measured

duplication rate pct 34.84 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.9 measured ×1 100%

mean base quality 35 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 34.84 measured ×0.4 89%

QC cost 47 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0