Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR8895636

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

NextSeq 550 short-read RNA-seq of Camponotus floridanus (carpenter ant) with 19 million reads and very high Q30 97.3% offers superior sequence quality for social-insect transcriptomics and caste-differentiation studies in this model formicid. The 37.2% GC and minimal N-content support robust isoform discovery and expression quantification across ant behavioral and physiological states.

Data type / assay
bulk-RNA-seq
Organism
Camponotus floridanus
Instrument
NextSeq 550
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1575351045 reported
total reads 19038056 reported
n content pct 1.2 measured
pct q20 bases 97.7 measured
pct q30 bases 97.3 measured
gc content pct 37.2 measured
mean read length 41.3 measured
mean base quality 34.7 measured
adapter content pct 0 measured
duplication rate pct 36.71 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.3 measured ×1 100%
mean base quality 34.7 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 36.71 measured ×0.4 85%
QC cost 43 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0