Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR8910712

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 short-read RNA-seq of Bombyx mori (silkworm) with 25 million reads and 98.4% Q30 bases provides exceptionally high-quality transcriptome data for this model lepidopteran and commercial silk-producing organism. The 48.5% GC and minimal quality-score variance enable robust detection of rare transcripts, alternative isoforms, and fine-resolution expression profiling across silkworm tissues and developmental stages.

Data type / assay
bulk-RNA-seq
Organism
Bombyx mori
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4512749220 reported
total reads 25070829 reported
n content pct 0.003 measured
pct q20 bases 98.4 measured
pct q30 bases 93.8 measured
gc content pct 48.5 measured
mean read length 90 measured
mean base quality 36.4 measured
adapter content pct 0 measured
duplication rate pct 66.91 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%
mean base quality 36.4 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 66.91 measured ×0.4 18%
QC cost 44 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0