SRR893027

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq (HiSeq 2000, Apis mellifera). Grade A, excellent reusability. Q30 bases at 88.1% is the limiting metric (scored 90/100 with heaviest weight), while adapter content and duplication are negligible—suitable for transcript quantification, though Q30 warrants confirmation if downstream variant calling is planned.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3568870800 reported

total reads 17844354 reported

n content pct 0 measured

pct q20 bases 95.9 measured

pct q30 bases 88.1 measured

gc content pct 37.3 measured

mean read length 100 measured

mean base quality 35 measured

adapter content pct 0.02 measured

duplication rate pct 27.26 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.1 measured ×1 91%

mean base quality 35 measured ×0.6 100%

adapter content pct 0.02 measured ×0.4 100%

duplication rate pct 27.26 measured ×0.4 100%

QC cost 49 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0