Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR9006458

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

41/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina MiSeq whole-genome sequencing (WGS) of Paratrichobius longicrus with only 6,762 reads and 1.99 Mb total bases represents ultra-low-coverage data (likely a rare or poorly-sampled organism), offering draft-level genomic information unsuitable for complete assembly. The 23% GC is substantially lower than typical bacteria, suggesting either compositional bias or possible contamination; this dataset is primarily useful for presence-detection or phylogenetic placement rather than detailed genomic analysis.

Data type / assay
WGS
Organism
Paratrichobius longicrus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1988310 reported
total reads 6762 reported
n content pct 0 measured
pct q20 bases 89.1 measured
pct q30 bases 76.1 measured
gc content pct 23 measured
mean read length 294 measured
mean base quality 32.3 measured
adapter content pct 0 measured
duplication rate pct 34.71 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 41/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 76.1 measured ×1 31%
duplication rate pct 34.71 measured ×0.5 17%
adapter content pct 0 measured ×0.4 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0